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Glossary/Payment Reconciliation

Payment Reconciliation

The process of matching payment transactions with deposits and accounting records.

What is Payment Reconciliation?

Payment reconciliation is the process of verifying that payment transactions match corresponding deposits, invoices, and accounting records. This includes matching individual transactions to bank deposits (which are often batched), accounting for fees, handling discrepancies, and ensuring accurate revenue recognition. Manual reconciliation is time-consuming and error-prone; modern systems automate this by syncing payment data directly with accounting and ERP systems.

Why It Matters

Poor reconciliation leads to revenue leakage, accounting errors, and audit issues. Manual reconciliation often takes hours daily for busy merchants. Automated reconciliation eliminates data entry, catches errors immediately, and provides real-time visibility into cash flow. This is especially critical for businesses with high transaction volumes or multiple payment channels.

Frequently Asked Questions

Deposits are net of processing fees. You also need to account for timing differences, chargebacks, refunds, and potential holds. This is why reconciliation matters.

Daily reconciliation is ideal, especially for high-volume businesses. At minimum, reconcile before closing monthly books. Automated systems can reconcile in real-time.

Common causes: fee calculation differences, timing issues, chargebacks, partial refunds, currency conversion, and data entry errors when manually matching.

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